Biochemistry Week 12

Meiosis, Mitosis, and the Creation of the Universe

Bio-chemistry doesn’t always inspire a complex mix of feelings wavering between primordial wow-ness mixed with wonder at the possibility of some grand orchestrating force that some people call “God” and that I might refer to as a multi-dimensional pantheistic playing field where higher dimensions interface with material reality mysterious and inexplicable ways. In this multi-dimensional mystical reality circus, I sometimes wonder how EXACTLY non-physical entities (Gods, angels, demons) influence material reality, or does science have creation all figured out with the Big Bang theory and quantum physics? The fact that nature seems to have synchronistically worked out both asexual reproduction (mitosis) and sexual reproduction (meiosis) to the effect that babies are given EXACTLY half of the chromosomes of each parent- to me- seems like some kind of small miracle that I have a hard time believing nature- in a strictly material or Darwinian natural evolution sense- just came up with by mere coincidence subject to survival of the fittest. Now I’m no creationist, but who or what inspired the process of mitosis whereby the innate intelligence of a cell causes its nucleus to split, creating two identical nuclei, or the equally small miracle of meiosis whereby an egg or sperm “know” that its chromosomal half is just around the bend in a hopefully suitable mate’s matching parts? If we are biologically dependent on the other sex’s chromosomes to create new life, might we also be emotionally or spiritually interdependent as well? Such musings conjure up images of Tibetan consorts sitting in yab yum- god and goddess dependent on the other to create the universe.

Citric Acid Cycle Animation

The animation we were asked would be more comprehensible if we more extensive chemistry foundation. I felt like I was listening to some quixotic futuristic language, and one that would take me years to learn. The one thing I got out of it is that citric acid cycle helps a cell produce ATP or other molecules out of raw building blocks such as amino acids, fatty acids, and monosaccharides. The other thing I got ouf of it was that I am a chemistry novice. I wish I had more to add.

Do humanity and bacteria share a common ancestor?

At first, I thought, “No way do human beings and bacteria have a common ancestor.” In bacterias’ cells, DNA is not separated from the cytoplasm, whereas in humanity’ DNA, the DNA is located in the cell nucleus. This biological difference seems to point to a lack of relation. However, there is a theory that suggests that all living things on Earth have a common ancestor, and this study has aimed to find the Last Universal Common Ancestor (LUCA). The theory suggests that the LUCA is a single cell that existed 3 or 4 billion years ago from which all life as evolved since. The scientific evidence for the common ancestor of humanity and bacteria is that the same exact genetic code is used in humans and bacteria, so that a gene from a human can be place into a bacterium, and the bacterium will make a human protein. This is how insulin is made. Who knew?

BioChemistry Week 11- Chemistry of Life

Biography:

Erin is a tantric yogini, crystal aficionado, singer, clarinetist, pianist, composer, face-painter, Vajrayana Buddhist & Hindu, and believer in the true teachings of the Cosmic Christ. She got her BA in music and studied hatha, Iyengar, bhakti, tantric yoga, dance, Eastern philosophy, and pranic healing outside of school. She is an empathic healer, mystic, masseus, and magician (both sex magic, wicca, and life as a magical practice) with keen insight into human psychology and a novel approach to combining yoga asanas and chakra sounds in order to open all the chakras, including the sacral and throat chakras. She had a full kundalini awakening a few years ago, which was one of the most ecstatic moments of her lie and opened up some past-life and multi-dimensional awareness. She has been around the universe a long time….

Once upon a time in her mid 20s, she accidentally became the clownarchist queen of the L.A. Underground and lived on a fairyland in Topanga Canyon, throwing shocking social deprogramming costume parties, performing Dadaist poetry, performance art, and generally creating all kinds of beautiful madness. Her life was truly like a living fairytale, before crashing down at the height of her fame, divorcing her husband and grieving her father who was murdered. She went from thinking she was going to become a rockstar and model in Europe to having a near-death episode at 27 which sent her fleeing to Tucson Arizona to rest for a few years before the Great Spirit told her move to San Francisco. It was in the ghetto of the Mission that she met her fairy rockstar soulmate who is currently producing and co-writing her first album, a haunting elegy of alien conspiracy and dark emotional landscapes.

Erin is still healing while attending acupuncture school. Her illness gave birth to an intense interest and study in healing, spiritual devotion and discipline, and a passion for crystal jewelry making, including crystal womb belts for female reproductive pain. She is currently getting weekly acupuncture sessions and studying like a prophetic lunatic.

Review of Animation

I may have the image of an animated dog with his head in the toilet forever emblazoned in my mind after checking out the Acids and Bases link. I may not. But what I will always remember is that aspirin, coca cola, citrus fruits, and vinegar are acidic. I actually heard somewhere that coca cola was so acidic it could clean the gunk caked onto your toilet bowl. More chemically speaking, an acidic substance is anything that produces hydrogen ions. A basic substance is anything that produces hydroxide ions. Examples of basic solutions are baking soda, detergents, ammonia cleaners, tums and Rolaids. I learned that when acid and bases react, they form salt and a water. I found a pH chart of common substances like blood and coffee interesting, as chemistry is more intereting when it is connected to the common items of every day living. Some of the other information was dry and technical, and no amount of cute blue bubble boxes and bullet points could make fun or accessible enough to say, yeah, I read it but still didn’t “get it.”

Does the End justify the Means?

“The ends justify the means” is usually a phrase trying to pawn off unethical actions because supposedly, the end result makes it worth the perceived harm of the causes or procedures that go into that end result. My view is that all actions have karma, and it is a fool’s errand to think that shitty procedures produce somehow good outcomes. “The ends justify the means” is a phrase often used to justify war, (including the Gulf War which caused many birth defects of veterans’ children and cancer as a result of the use of depleted Uranium weapons used). “The Ends justify the means” never looks at long-term effects, only immediate gratification for some desired outcome which usually only benefits one party and not the Greater Whole (and really, we are all One). Every single action has karmic repercussion, which is why it’s a stupid phrase to use as an excuse to justify any unethical behavior thinking that if we can just put up with the b.s., we will somehow grow flowers out of it.

Chemistry Week 8

Silicon as a Semiconductor

Silicon and Germanium are the most common semi-conductors. Silicon’s atomic number is 14; its symbol is Si, and its atomic weight is 28. 0855 Silicon (along with) has 4 electrons in its outer orbital, which each form covalent bonds with other atoms. These four covalent bonds give Silicon both crystal and a lattice structure. The crystalline structure that its forms is a silvery, metallic-looking substance, although it is not actually a metal. A pure silicon crystal is nearly an insulator by virtue of the fact that its electrons are all “tied up” in covalent bonds and can’t move around freely. In order for a substance to be a good conductor, it has to have free electrons to move around, since electricity is dependent on the free flow of atoms. However, Silicon can become a better conductor by “doping” it up, adding impurities that allow it to become a better conductor in addition to an already viable insulator, hence the term “semi-conductor.” Silicon is used in almost all electronic devices.

Chembalancer- More Fun than you’d Guess

I have to admit I was skeptical of the fun potential of a fun based chemistry website, but for someone with a genuine curiosity about the way the world works, funbasedlearning.com actually was fun. Balancing chemical equations in the Classic Chembalancer game was easy enough, but the fun part was the info about the molecules once you got the answer right. It made chemical equations seems much less esoteric, abstract, and removed from my daily life to be rewarded with interesting information after correctly balancing chemical equation, so that I knew what these compounds were actually responsible for in the real world. Some things that I learned were that HCl is the hydrochloric acid that helps us digest food; magnesium gives fireworks their pyrotechnic flare; mercury is in thermometers but poisonous with skin contact. The element quiz was interesting, somehow not as addictive, but certainly good fodder for preparing for a Chemistry category on Jeopardy. I might be an uber nerd for admitting as much, (or I may just put a smile on my Chemistry teacher’s face), but I may even dink around on this site instead of using all my internet freetime on youtube music videos and online tattoo photographs.

Balancing Equations Tutorial

In the Balancing Equations tutorial, the student is prompted to answer how many atoms comprise the reactant and then the product. It took me one try to discern the difference between the reactant (which is the beginning part of the equation) and the product, which is the second part of the equation, and it also took that first try for me to remember basic algebra rules that anything inside the parentheses is multiplied by the number outside the parentheses. The computer pointed out that the hydrogen and oxygen in the equation were not balanced (through no mistake of my own), and so it took it upon itself to add a 4 in front of the H2O molecule to balance the product with the reactant.

Week 7: Molecular Weight

Alkali Earth metal of the week: Magnesium

Magnesium is an alkali Earth metal with an atomic number of 12 and an atomic weight of 24.3050, which is abbreviated by the letters Mg. Magnesium is the fourth most abundant element on Earth, comprising a whopping 13% of Earth’ mass. Magnesium is easily built in supernova stars and is highly water soluble, which makes it the third most common element dissolved in seawater. Magnesium is the 11^th most common element in the human body, where it manipulates DNA, RNA, and ATP. Mg is crucial the function of living cells. It is also found in chlorophyll and is used medicinally as laxatives, antacid, and many conditions where calming nerves or blood vessel spasms is required.

Avogadro’s hypothesis

Avogadro’s hypothesis was that equal volumes of gases at the same temperature and pressure contain equal numbers of molecules. He also made a distinction between atoms and molecules and said that atoms of the same element could combine, which contradicted scientist John Dalton’s beliefs. Although these statements are widely accepted by the scientific community now, they were not taken seriously when Avogadro made these findings because his work was in an obscure publication and also contradicted the opinions of John Dalton, who was a well-respected scientist of Avogadro’s era. Shortly after Stanislao Cannizaro explained Avogadro’s principles in “Sketch of a Course of Chemical Philosophy,” Avogadro finally received the acclaim his hypotheses deserved. Avogadro’s hypothesis led future scientists to determine Avogadro’s number, which was based on Avogadro’s basic hypothesis.

What is a mole?

It was show that a Gram Molecular Weight of gas at standard temperature and pressure occupies 22.4 liters of volume. A mole is the number of molecules contained in 22.4 liters of a gas at standard temperature and pressure. The benefit of the “mole” concept is that it allows the scientist to relate the weight of the material to the number of molecules in that weight, which is a ridiculously large amount that could not be counted under a microscope or any easy quantitative measure. Avogadro’s number- which expresses this ridiculously large amount- is 6.0221367 x 10 exp23- and is the number of molecules in 22.4 liters of gas at standard temperature and pressure.

Week 6: Electrochemistry & Alchemy

Halogen of the Week: Iodine

I chose Iodine as my Halogen of the Week because of the recent buzz over the supplement Iodine Potassium which is said to protect the thyroid against radiation.  This is because Iodine is required to synthesize thyroid hormones which contain Iodine. As a by-product of nuclear fission, the radioactive isotope iodine-131 concentrates in the thyroid alongside the healthy form of Iodine. If a person is somewhat deficient in Iodine, these radioactive isotopes will collect even more in the thyroid and can easily cause cancer. Iodine deficiency is a cause of intellectual disability in about 2 billion of the world’s population. Television is second (j/k). Iodine has a chemical symbol of I, an atomic number of 53 and an atomic weight of 126.90447. Its high atomic number makes it relatively rare on Earth. Elemental iodine vapor is purple in color. Iodine compounds are primarily used in nutrition but have also been used industrially and in making contrast materials for x-rays. Iodine can be found in the ocean and is highly water soluble. It is the heaviest element used for biological functions by lifeforms.

Alchemy- science, magic, art, or all three?

Although alchemy produces what appears to be magical results, alchemy is primarily a science that was later adopted by esoteric and metaphysical traditions including Hermeticism to describe turning internal yet metaphoric lead into spiritual and emotional gold. Part of the main practice of alchemical science is turning base metals like lead and mercury into gold and silver, This appears to be magic, but is based on scientific principles having to do with these elements having similar atomic numbers that can be tweaked through chemical processes to become other elements with similar atomic numbers. The origin of how the word “magic” got ascribed to alchemy was through early Ayurvedic alchemists  called “Maghas,” who would heal diseases through the use of herbs and metals. Occultists and metaphysicians who explored internal alchemy formulated various diagrams that both bore a resemblance to art and magic. In what could be deemed as “high” forms of any practice involving the alchemy of science, art, or magic, the ultimate goal is to take the practitioner, patient, or audience into some higher, lighter, more rarefied state than when they started.

Week 5: Chemistry of Color and Nutrition

My Inert Gas of the Week

My inert gas of the week is Neon, because how did nature go wrong in making an element that provides day-glow ‘OPEN’ signs for restaurants and made Las Vegas a glimmer in the Luxor pyramidal eye of capitalistic neon pseudo-god who blinks at you, beckoning you to come and waste your money on slot machines? Actually, neon is considered rare on Earth in comparison to its abundant presence around the universe, which makes you wonder if some of those gorgeous rainbow-colored nebulas have neon gas, which is a noble gas. Neon- which is found in trace amounts in the air- is extracted from air for commercial purposes. Neon is a Noble gas with 10 protons and 10 neutrons and is abbreviated “Ne.” I once knew a meth head who invented the name of a fake God named “Neon Ray.” Makes you wonder….

Colors in the Kitchen

When I actually had a kitchen, I remember making these beautiful kale salads our of purple and green kale, purple beets, red cherry tomatoes, orange carrots, light green cucumber, rich green broccoli, white almonds, yellow bell pepper, and brown lentils. I was a raw food health freak and true believer in the rainbow salad which made me feel like I had just eaten the super-charged food of the Gods. I also had what I call a healthy obsession with tomatoes in my food, everything from eggs, to soups, to salads, which was pretty much the main stay of my diet. Who could blame me? Tomatoes have anti-oxidant lycopene which protects against a variety of cancers, half of which I’ve probably had in my family. I wear a lot of crystals too, and supposedly Herkimer diamond protects against radiation and the diseases caused by it, but it also increase my intuiton and contact with higher guidance, and like the guidance of angel in my head the other day (versus schizophrenic delusions that tell you to jump off a building), I got the message, “buy strawberries and spinach.” It certainly didn’t sound like bad advice, so I did. I checked out the health properties of spinach and found out that they it is considered by Chinese medicine to be sweet, cool, and moistening, I also found out that it has more protein than most vegetables, can help with vision weakness (amongst other things which I have) and has anti-oxidant, digestive, diuretic, laxative, lymph-cleansing and tonic properties. I know I need digestive support and tonifying. Spinach is rich in beta-carotene, vitamins B6, C, K, folic acid, calcium, iron, potassium, sulfur, and chlorophyll. Strawberries possess a few things that I realize my body wants: they have a moistening quality on the lungs and can therefore help a dry cough and sore throat, which I have recently been battling. They are rich in vitamins B, C, E, and iron, and have a blood-purifying effect. I have been told in the clinic that I have blood heat, so I imagine a cooling fruit with a blood purifying effect would be just what the Chinese doctor ordered!

The Importance of Color in Minerals

I found it interesting that any element could be responsible for any color, but that copper usually produces green and blue. Copper ore is responsible for making malachite green, and also for making malachite gem elixir toxic. Water that is soaked in malachite can be applied externally but not internally as copper taken in sufficient quantities is toxic. It sure does make a lovely green however. Atomic bonds are what absorb or emit various wavelengths of light that can appear as different colors, so bonds of different elements are responsible for producing different crystals colors. The color is not necessarily elementary to the color of the elements that compose it, but the wavelengths of light that the atomic bonds of the elements absorb or emit. Material reality gets eerie when you think of it to that micro-degree.

Week 3 Molecular Structure and Bonding Quiz

Identify three elements with a single electron in their outer orbital.

1. The Hydrogen atom- the first element on the Periodic Table- only has one electron, which means it also only has one electron is its outer orbital, which is a 1s orbital.

2. The Helium atom has two electrons, which means that it has one electron in the 1s orbital and one electron in the outer 2s orbital.

3. The Lithium atom has three electrons, which means that it has one electron in the 1s orbital, one electron in the 2s orbital, and one electron in the outer 2p orbital.

Why do you think some chemical bonds are stronger than others?

Whether an ionic bond or a covalent bond is stronger is often dependent on the elements that form the molecular bond. Some elements bond more strongly than others. However, an ionic bond can at times be stronger than a covalent bond because in ionic bonds, electrons are traded, forming two ions- one with a positive charge and the other a negative charged- that are strongly attracted to each other. Covalent bonds merely share an electron and are tricked into thinking they have a full valence shell.

A polar bond is stronger than a non-polar bond because because electrons are shared unequally. The more electrognegative atom has a high electron affinity, pulling the shared electron and adjacent atom closer to it, creating a stronger bond.

In what ways do you think “Neptune’s Medicine’s Chest” might be useful in the future?

If it was discovered that there is a fungus or seaweed in the ocean, that say, cures cancer or fibromyalgia, and synchronistically- at the same time this fungus were to make a persuasive movement of macrobiotic enthusiasts flee to the Mediterranean shores to an ocean side healing center- one could potentially throw up the proverbial finger to the pharmaceutical companies once and for all and do yoga on the beach in shea butter organic sunscreen mixed with special compounds from the ocean that were terrific for your skin and happily munch on fish and seaweed salad drinking alcholol free margaritas, dancing in drum circles, farting cancer-free farts forever til the day they die, but not of cancer from nuclear fall-out.